Allomyces Blastocladiella simplex from Stajich et al 2009 B. dendrobatidis from Fritz-Laylin et al 2016

Welcome to chytrids.org!

This website is a work in progress to provide access to protocols we are currently developing for genetic manipulation of Chytrid fungi, focusing on two species: Batrachochytrium dendrobatidis and Rhizoclosmatium globosum. We are currently developing useful tools, including improved growth medium, robust freezing protocols, and molecular transformation, and will share protocols here as they become available. Watch this space!

What are chytrid fungi?

Although most fungi are sessile, the early-diverging chytrid fungi form distinctive zoospores--a single-celled life stage that swim using a flagellum. These "zoosporic fungi" were first grouped as a single phylum but were later shown to be paraphyletic, and now are classified in two distinct phyla (Figure 1), the Blastocladiomycota and Chytridiomycota (James, Kauff, et al. 2006; James, Letcher, et al. 2006).

Fungal Phylogeny

Chytrid fungi are a diverse group of approximately 1000 species that occupy diverse environmental niches. Two species are important pathogens of animals. Batrachochytrium dendrobatidis is emerging infectious disease of amphibians with worldwide distribution (Fisher, Garner, et al. 2009). Batrachochytrium salamandrivorans is an even more recently described emerging pathogen found in Europe (Martel et al. 2013; Spitzen-van der Sluijs et al. 2016) which has the depressing potential to ravage North American salamander populations (Martel et al. 2014; Yap et al. 2015; Gray et al. 2015).

Who is chytrids.org?

We are four collaborating laboratories currently developing chytrids as "model organisms", including molecular transformation, gene disruption, and CRISPR technologies:

Jason Stajich: expert in mycology, bioinformatics, molecular evolution and phylogenetics, and functional and evolutionary genomics.
Scott Dawson: expert in cytoskeletal biology, flagellar motility, comparative genomics, deep eukaryotic evolution, parasitology, and protists.
Lillian Fritz-Laylin: expert in flagellar and amoeboid motility, comparative genomics, and deep eukaryotic evolution.
Tim Stearns: Recognized leader in yeast genetics and cell biology of both yeast and mammalian cells, including cilia and centrioles.

Some useful resources


Contact jason.stajich[at]ucr.edu with comments or questions. This site is still being developed.